Venom variation and evolution in populations of montane pitvipers (Viperidae :Cerrophidion).

Cerrophidion tzotzilorum

This Github page contains the code and scripts used in the development of the paper.

first_part

This folder contain a markdown with the shell code used for assembly of transcriptomes, annotation, expression analysis, phylogenetics, variant calling and selection analisys. There are several scripts used that are found in the scropts folder. Some scripts are owned form a third party, in those cases we mentioned the location of the original script or the contact were the scripts might be found.

second_part

This folder contain the R script with the statistics analysis that compare selection signals in toxins vs nontoxins, the necessary data to run the analysis might be found withing the folder.

other folders

The other folders containg additionals information. data folder contain the RSEM results in a extended format. The pictures folder contains the raw plots from were the figures of the paper were made.